Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cxcl12P40224 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cxcl12P40224 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.62■■□□□ 1.05
Cxcl12P40224 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cxcl12P40224 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cxcl12P40224 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cxcl12P40224 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cxcl12P40224 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.61■■□□□ 1.05
Cxcl12P40224 AV356131-201ENSMUST00000206201 750 ntBASIC21.61■■□□□ 1.05
Cxcl12P40224 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.61■■□□□ 1.05
Cxcl12P40224 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cxcl12P40224 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cxcl12P40224 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC21.6■■□□□ 1.05
Cxcl12P40224 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cxcl12P40224 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.6■■□□□ 1.05
Cxcl12P40224 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cxcl12P40224 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
Cxcl12P40224 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cxcl12P40224 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Cxcl12P40224 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC21.59■■□□□ 1.05
Cxcl12P40224 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Cxcl12P40224 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cxcl12P40224 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cxcl12P40224 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cxcl12P40224 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
Cxcl12P40224 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Cxcl12P40224 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Cxcl12P40224 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Cxcl12P40224 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
Cxcl12P40224 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Cxcl12P40224 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
Cxcl12P40224 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Cxcl12P40224 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Cxcl12P40224 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Cxcl12P40224 Gm42778-201ENSMUST00000199644 553 ntBASIC21.57■■□□□ 1.04
Cxcl12P40224 Gm10602-201ENSMUST00000098239 609 ntBASIC21.57■■□□□ 1.04
Cxcl12P40224 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Cxcl12P40224 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Cxcl12P40224 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Cxcl12P40224 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cxcl12P40224 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cxcl12P40224 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Cxcl12P40224 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cxcl12P40224 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Cxcl12P40224 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC21.56■■□□□ 1.04
Cxcl12P40224 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
Cxcl12P40224 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC21.56■■□□□ 1.04
Cxcl12P40224 Gm10033-202ENSMUST00000211874 928 ntBASIC21.56■■□□□ 1.04
Cxcl12P40224 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cxcl12P40224 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Cxcl12P40224 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21.56■■□□□ 1.04
Cxcl12P40224 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Cxcl12P40224 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cxcl12P40224 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
Cxcl12P40224 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cxcl12P40224 Smad6-203ENSMUST00000179458 273 ntBASIC21.55■■□□□ 1.04
Cxcl12P40224 Gm43530-201ENSMUST00000195920 274 ntBASIC21.55■■□□□ 1.04
Cxcl12P40224 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC21.55■■□□□ 1.04
Cxcl12P40224 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC21.55■■□□□ 1.04
Cxcl12P40224 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cxcl12P40224 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Cxcl12P40224 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cxcl12P40224 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cxcl12P40224 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
Cxcl12P40224 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cxcl12P40224 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cxcl12P40224 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cxcl12P40224 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cxcl12P40224 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Cxcl12P40224 Gm12669-201ENSMUST00000122162 1009 ntBASIC21.54■■□□□ 1.04
Cxcl12P40224 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cxcl12P40224 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Cxcl12P40224 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.54■■□□□ 1.04
Cxcl12P40224 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cxcl12P40224 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
Cxcl12P40224 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Cxcl12P40224 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cxcl12P40224 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cxcl12P40224 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cxcl12P40224 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cxcl12P40224 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Cxcl12P40224 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cxcl12P40224 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cxcl12P40224 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Cxcl12P40224 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cxcl12P40224 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.52■■□□□ 1.03
Cxcl12P40224 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cxcl12P40224 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Cxcl12P40224 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cxcl12P40224 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cxcl12P40224 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cxcl12P40224 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Cxcl12P40224 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cxcl12P40224 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cxcl12P40224 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC21.5■■□□□ 1.03
Cxcl12P40224 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.5■■□□□ 1.03
Cxcl12P40224 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Cxcl12P40224 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cxcl12P40224 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cxcl12P40224 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC21.49■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms