Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Mettl6-204ENSMUST00000227595 1027 ntBASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 AC154671.1-201ENSMUST00000228617 1578 ntBASIC12.34□□□□□ -0.43
Vps28Q9D1C8 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Vps28Q9D1C8 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Vps28Q9D1C8 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC12.33□□□□□ -0.43
Vps28Q9D1C8 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Gm28450-201ENSMUST00000187349 638 ntBASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Gm44711-201ENSMUST00000205414 1264 ntBASIC12.33□□□□□ -0.44
Vps28Q9D1C8 AC153954.1-201ENSMUST00000216959 255 ntBASIC12.33□□□□□ -0.44
Vps28Q9D1C8 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Vps28Q9D1C8 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Gm22133-201ENSMUST00000102082 109 ntBASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Gm5616-201ENSMUST00000165252 384 ntBASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Gm8741-201ENSMUST00000174736 384 ntBASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Gm28071-201ENSMUST00000190355 478 ntBASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Gm37666-201ENSMUST00000194110 866 ntBASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Gm7003-201ENSMUST00000195089 312 ntBASIC12.32□□□□□ -0.44
Vps28Q9D1C8 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Rps4l-202ENSMUST00000204242 789 ntBASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Gm19208-201ENSMUST00000213861 912 ntBASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Gm5455-201ENSMUST00000058710 715 ntBASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Vps28Q9D1C8 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms