Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm12058-201ENSMUST00000118614 437 ntBASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Gm37986-201ENSMUST00000193285 383 ntBASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Gm44094-201ENSMUST00000204703 2030 ntBASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gm3287-205ENSMUST00000228893 1332 ntBASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gm12217-201ENSMUST00000118858 696 ntBASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Mir6927-201ENSMUST00000184494 71 ntBASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gm38092-201ENSMUST00000195600 653 ntBASIC13.48□□□□□ -0.25
Smc1aQ9CU62 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gm37827-201ENSMUST00000194486 1542 ntBASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Smc1aQ9CU62 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Gm8617-201ENSMUST00000118796 2222 ntBASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Gm12176-201ENSMUST00000121420 875 ntBASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Gm12566-201ENSMUST00000121479 359 ntBASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 63.9 ms