Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Gm17889-201ENSMUST00000198410 598 ntBASIC18.18■□□□□ 0.5
Cux1P53564 Gm5298-201ENSMUST00000201122 892 ntBASIC18.18■□□□□ 0.5
Cux1P53564 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Cux1P53564 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
Cux1P53564 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Cux1P53564 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Gm25148-201ENSMUST00000104611 123 ntBASIC18.18■□□□□ 0.5
Cux1P53564 Gm14071-201ENSMUST00000117817 509 ntBASIC18.18■□□□□ 0.5
Cux1P53564 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC18.18■□□□□ 0.5
Cux1P53564 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Nudt12-203ENSMUST00000174122 1244 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Gm9081-201ENSMUST00000182346 991 ntBASIC18.18■□□□□ 0.5
Cux1P53564 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC18.18■□□□□ 0.5
Cux1P53564 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 AC159376.1-201ENSMUST00000218504 630 ntBASIC18.18■□□□□ 0.5
Cux1P53564 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC18.18■□□□□ 0.5
Cux1P53564 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cux1P53564 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Gm9415-201ENSMUST00000200462 1321 ntBASIC18.17■□□□□ 0.5
Cux1P53564 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
Cux1P53564 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
Cux1P53564 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC18.17■□□□□ 0.5
Cux1P53564 Gm13351-201ENSMUST00000118087 414 ntBASIC18.17■□□□□ 0.5
Cux1P53564 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC18.17■□□□□ 0.5
Cux1P53564 AC153152.3-201ENSMUST00000222188 1135 ntBASIC18.17■□□□□ 0.5
Cux1P53564 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cux1P53564 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Cux1P53564 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC18.16■□□□□ 0.5
Cux1P53564 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 Gm5641-201ENSMUST00000091130 1488 ntBASIC18.16■□□□□ 0.5
Cux1P53564 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Cux1P53564 AC138329.2-201ENSMUST00000225579 1842 ntBASIC18.16■□□□□ 0.5
Cux1P53564 Gm12218-201ENSMUST00000117666 399 ntBASIC18.16■□□□□ 0.5
Cux1P53564 Gm14270-201ENSMUST00000118388 846 ntBASIC18.16■□□□□ 0.5
Cux1P53564 Gm26047-201ENSMUST00000157308 113 ntBASIC18.16■□□□□ 0.5
Cux1P53564 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC18.16■□□□□ 0.5
Cux1P53564 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC18.16■□□□□ 0.5
Cux1P53564 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Cux1P53564 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 Gm26047-202ENSMUST00000198840 115 ntBASIC18.16■□□□□ 0.5
Cux1P53564 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 Gm45500-201ENSMUST00000211676 803 ntBASIC18.16■□□□□ 0.5
Cux1P53564 Gm5468-202ENSMUST00000227851 682 ntBASIC18.16■□□□□ 0.5
Cux1P53564 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cux1P53564 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Cux1P53564 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Gm12194-201ENSMUST00000117756 1012 ntBASIC18.15■□□□□ 0.5
Cux1P53564 Anxa8-202ENSMUST00000120077 1208 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Cux1P53564 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC18.15■□□□□ 0.5
Cux1P53564 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC18.15■□□□□ 0.5
Cux1P53564 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
Cux1P53564 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms