Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Traf1P39428 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Traf1P39428 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Traf1P39428 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Traf1P39428 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC13.93□□□□□ -0.18
Traf1P39428 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC13.93□□□□□ -0.18
Traf1P39428 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC13.93□□□□□ -0.18
Traf1P39428 Gm15515-201ENSMUST00000117827 822 ntBASIC13.93□□□□□ -0.18
Traf1P39428 Gm13611-201ENSMUST00000118269 318 ntBASIC13.93□□□□□ -0.18
Traf1P39428 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Gm6905-201ENSMUST00000205729 511 ntBASIC13.93□□□□□ -0.18
Traf1P39428 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Traf1P39428 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC13.93□□□□□ -0.18
Traf1P39428 Gm13812-201ENSMUST00000118061 1347 ntBASIC13.92□□□□□ -0.18
Traf1P39428 Gm13810-201ENSMUST00000118584 1347 ntBASIC13.92□□□□□ -0.18
Traf1P39428 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Gm5780-201ENSMUST00000217774 1834 ntBASIC13.92□□□□□ -0.18
Traf1P39428 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
Traf1P39428 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Gm12857-201ENSMUST00000117678 592 ntBASIC13.92□□□□□ -0.18
Traf1P39428 Gm11660-201ENSMUST00000120955 412 ntBASIC13.92□□□□□ -0.18
Traf1P39428 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Gm8100-201ENSMUST00000182906 988 ntBASIC13.92□□□□□ -0.18
Traf1P39428 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC13.92□□□□□ -0.18
Traf1P39428 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
Traf1P39428 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Traf1P39428 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
Traf1P39428 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC13.92□□□□□ -0.18
Traf1P39428 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Traf1P39428 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Traf1P39428 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Traf1P39428 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
Traf1P39428 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
Traf1P39428 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Traf1P39428 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC13.91□□□□□ -0.18
Traf1P39428 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC13.91□□□□□ -0.18
Traf1P39428 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC13.91□□□□□ -0.18
Traf1P39428 Gm20426-201ENSMUST00000173657 440 ntBASIC13.91□□□□□ -0.18
Traf1P39428 Ighv1-48-201ENSMUST00000191795 294 ntBASIC13.91□□□□□ -0.18
Traf1P39428 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
Traf1P39428 Gm5369-201ENSMUST00000217499 588 ntBASIC13.91□□□□□ -0.18
Traf1P39428 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Gm5705-201ENSMUST00000066241 711 ntBASIC13.91□□□□□ -0.18
Traf1P39428 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Traf1P39428 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC13.91□□□□□ -0.18
Traf1P39428 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms