Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Col3a1P08121 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 AC108858.2-201ENSMUST00000228186 1425 ntBASIC14.18□□□□□ -0.14
Col3a1P08121 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Col3a1P08121 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Col3a1P08121 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC14.18□□□□□ -0.14
Col3a1P08121 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC14.18□□□□□ -0.14
Col3a1P08121 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Col3a1P08121 AC154517.2-201ENSMUST00000220829 2458 ntBASIC14.18□□□□□ -0.14
Col3a1P08121 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 Gm15615-201ENSMUST00000118876 198 ntBASIC14.18□□□□□ -0.14
Col3a1P08121 Mir6998-201ENSMUST00000183343 64 ntBASIC14.18□□□□□ -0.14
Col3a1P08121 AC124457.1-201ENSMUST00000198845 120 ntBASIC14.18□□□□□ -0.14
Col3a1P08121 CT573047.1-201ENSMUST00000223652 851 ntBASIC14.18□□□□□ -0.14
Col3a1P08121 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC14.18□□□□□ -0.14
Col3a1P08121 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Col3a1P08121 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col3a1P08121 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Col3a1P08121 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC14.17□□□□□ -0.14
Col3a1P08121 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Col3a1P08121 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Col3a1P08121 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Gm12516-201ENSMUST00000120819 385 ntBASIC14.17□□□□□ -0.14
Col3a1P08121 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC14.17□□□□□ -0.14
Col3a1P08121 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC14.17□□□□□ -0.14
Col3a1P08121 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC14.17□□□□□ -0.14
Col3a1P08121 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC14.17□□□□□ -0.14
Col3a1P08121 Gm2875-201ENSMUST00000211333 360 ntBASIC14.17□□□□□ -0.14
Col3a1P08121 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Col3a1P08121 Gm21358-201ENSMUST00000191645 1659 ntBASIC14.17□□□□□ -0.14
Col3a1P08121 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC14.17□□□□□ -0.14
Col3a1P08121 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Col3a1P08121 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col3a1P08121 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC14.16□□□□□ -0.14
Col3a1P08121 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Col3a1P08121 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Col3a1P08121 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Col3a1P08121 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC14.16□□□□□ -0.14
Col3a1P08121 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
Col3a1P08121 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Col3a1P08121 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC14.16□□□□□ -0.14
Col3a1P08121 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
Col3a1P08121 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Gm4294-201ENSMUST00000105169 614 ntBASIC14.16□□□□□ -0.14
Col3a1P08121 n-R5s84-201ENSMUST00000122591 109 ntBASIC14.16□□□□□ -0.14
Col3a1P08121 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Gm20495-201ENSMUST00000173902 235 ntBASIC14.16□□□□□ -0.14
Col3a1P08121 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Col3a1P08121 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC14.16□□□□□ -0.14
Col3a1P08121 Gm3028-201ENSMUST00000213805 1119 ntBASIC14.16□□□□□ -0.14
Col3a1P08121 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC14.16□□□□□ -0.14
Col3a1P08121 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms