Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Gm43267-201ENSMUST00000199664 1796 ntBASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Gm5419-201ENSMUST00000119301 527 ntBASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Gm45331-201ENSMUST00000209868 554 ntBASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Gm45598-202ENSMUST00000210719 986 ntBASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Gm43727-201ENSMUST00000198021 2647 ntBASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Gm44152-201ENSMUST00000205007 1691 ntBASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Gm9796-201ENSMUST00000062249 2250 ntBASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Gm20482-202ENSMUST00000174729 825 ntBASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Gm38241-201ENSMUST00000192641 898 ntBASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 AC107453.4-201ENSMUST00000227068 1817 ntBASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ddx56Q9D0R4 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Gm9136-201ENSMUST00000193368 454 ntBASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Rprl1-202ENSMUST00000198476 238 ntBASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Gm7118-201ENSMUST00000200167 1003 ntBASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx56Q9D0R4 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC12.65□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 95.6 ms