Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Ddx28Q9CWT6 Gm43522-201ENSMUST00000196697 1922 ntBASIC11.33□□□□□ -0.6
Ddx28Q9CWT6 Gm8793-201ENSMUST00000183069 1303 ntBASIC11.33□□□□□ -0.6
Ddx28Q9CWT6 Hnrnph2-203ENSMUST00000074950 2426 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ddx28Q9CWT6 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Madd-213ENSMUST00000111376 5927 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm42498-201ENSMUST00000199981 1372 ntBASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Zfp608-201ENSMUST00000064763 6112 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Nipbl-201ENSMUST00000052965 8815 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Crebrf-203ENSMUST00000142539 2674 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm12957-201ENSMUST00000117835 377 ntBASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm11964-201ENSMUST00000120982 444 ntBASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm9728-201ENSMUST00000200197 1055 ntBASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm44124-201ENSMUST00000204159 472 ntBASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 AC140451.2-201ENSMUST00000228030 664 ntBASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Epb41l1-201ENSMUST00000029155 6220 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 Gm18227-201ENSMUST00000211082 1468 ntBASIC11.32□□□□□ -0.6
Ddx28Q9CWT6 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Gm11591-201ENSMUST00000120063 702 ntBASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Snora78-201ENSMUST00000158630 128 ntBASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 AC125350.2-201ENSMUST00000224737 727 ntBASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 AC132317.1-201ENSMUST00000227227 962 ntBASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 AC126253.1-201ENSMUST00000227974 824 ntBASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Snora73a-201ENSMUST00000082453 205 ntBASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 n-R5s195-201ENSMUST00000082891 119 ntBASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Muc13-201ENSMUST00000023520 2942 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ddx28Q9CWT6 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ddx28Q9CWT6 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ddx28Q9CWT6 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms