Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Gm12196-201ENSMUST00000120954 262 ntBASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Gm25881-201ENSMUST00000157783 103 ntBASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Gm18734-201ENSMUST00000172937 808 ntBASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Gm38228-201ENSMUST00000193169 1293 ntBASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Vps54Q5SPW0 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Gm12036-201ENSMUST00000120008 530 ntBASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 H2-Q3-201ENSMUST00000172583 608 ntBASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Gm7848-201ENSMUST00000210739 718 ntBASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Gm37269-201ENSMUST00000193906 1891 ntBASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 AC159308.2-201ENSMUST00000213592 2325 ntBASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Vps54Q5SPW0 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Gm12857-201ENSMUST00000117678 592 ntBASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Gm11450-201ENSMUST00000121144 333 ntBASIC14.4□□□□□ -0.1
Vps54Q5SPW0 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Cd63-ps-202ENSMUST00000154992 717 ntBASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
Vps54Q5SPW0 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms