Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 Gm5912-201ENSMUST00000122282 1438 ntBASIC11.27□□□□□ -0.6
Trim40Q3UWA4 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 AC122811.1-201ENSMUST00000222257 2921 ntBASIC11.27□□□□□ -0.6
Trim40Q3UWA4 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim40Q3UWA4 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Gm27331-201ENSMUST00000183705 60 ntBASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Gm2824-203ENSMUST00000226189 1228 ntBASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trim40Q3UWA4 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Slc45a3-201ENSMUST00000027695 3340 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gm9083-201ENSMUST00000120423 819 ntBASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gm11964-201ENSMUST00000120982 444 ntBASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gm11597-201ENSMUST00000121423 964 ntBASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gm23984-201ENSMUST00000157139 203 ntBASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gm8810-201ENSMUST00000172895 754 ntBASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gm18304-201ENSMUST00000189162 546 ntBASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gm37497-201ENSMUST00000195830 798 ntBASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gm17794-201ENSMUST00000220252 955 ntBASIC11.26□□□□□ -0.61
Trim40Q3UWA4 CT025535.1-201ENSMUST00000227172 491 ntBASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC11.26□□□□□ -0.61
Trim40Q3UWA4 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms