Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Gm43447-201ENSMUST00000198471 1535 ntBASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3aQ3ULJ3 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Gm18198-201ENSMUST00000204986 1551 ntBASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Gm1848-201ENSMUST00000120711 789 ntBASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Gm24844-201ENSMUST00000158679 127 ntBASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Gm9034-201ENSMUST00000182071 1005 ntBASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Gm29155-201ENSMUST00000185910 269 ntBASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Gm17931-201ENSMUST00000208132 634 ntBASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3aQ3ULJ3 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Gm2420-201ENSMUST00000119864 2149 ntBASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Gm13384-201ENSMUST00000117166 1344 ntBASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Gm28323-201ENSMUST00000186817 2499 ntBASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Gm25072-201ENSMUST00000175233 235 ntBASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Gm18367-201ENSMUST00000176139 600 ntBASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Gm44506-201ENSMUST00000206278 965 ntBASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Prrxl1-205ENSMUST00000228878 723 ntBASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3aQ3ULJ3 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Upf3aQ3ULJ3 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC12.65□□□□□ -0.39
Upf3aQ3ULJ3 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
Upf3aQ3ULJ3 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Upf3aQ3ULJ3 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 79.2 ms