Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm13127-201ENSMUST00000118978 1389 ntBASIC14.35□□□□□ -0.11
Rfx1P48377 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Rfx1P48377 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC14.35□□□□□ -0.11
Rfx1P48377 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Rfx1P48377 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC14.35□□□□□ -0.11
Rfx1P48377 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
Rfx1P48377 Gm15172-201ENSMUST00000118945 1046 ntBASIC14.35□□□□□ -0.11
Rfx1P48377 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC14.35□□□□□ -0.11
Rfx1P48377 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Rfx1P48377 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC14.35□□□□□ -0.11
Rfx1P48377 Gm18584-201ENSMUST00000203098 964 ntBASIC14.35□□□□□ -0.11
Rfx1P48377 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Gm45930-201ENSMUST00000221330 292 ntBASIC14.35□□□□□ -0.11
Rfx1P48377 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Rfx1P48377 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC14.35□□□□□ -0.11
Rfx1P48377 Zscan30-202ENSMUST00000224144 1458 ntBASIC14.35□□□□□ -0.11
Rfx1P48377 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Rfx1P48377 Gm38055-201ENSMUST00000195353 2217 ntBASIC14.35□□□□□ -0.11
Rfx1P48377 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rfx1P48377 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Gm21939-201ENSMUST00000221137 2773 ntBASIC14.34□□□□□ -0.11
Rfx1P48377 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC14.34□□□□□ -0.11
Rfx1P48377 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Gm43102-201ENSMUST00000201004 2324 ntBASIC14.34□□□□□ -0.11
Rfx1P48377 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Gm11591-201ENSMUST00000120063 702 ntBASIC14.34□□□□□ -0.11
Rfx1P48377 Gm13342-201ENSMUST00000121055 207 ntBASIC14.34□□□□□ -0.11
Rfx1P48377 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Gm9002-201ENSMUST00000178437 499 ntBASIC14.34□□□□□ -0.11
Rfx1P48377 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Gm39317-201ENSMUST00000213360 1138 ntTSL 5 BASIC14.34□□□□□ -0.11
Rfx1P48377 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC14.34□□□□□ -0.11
Rfx1P48377 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC14.34□□□□□ -0.11
Rfx1P48377 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Slc45a3-201ENSMUST00000027695 3340 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Rfx1P48377 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Rfx1P48377 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC14.34□□□□□ -0.11
Rfx1P48377 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rfx1P48377 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rfx1P48377 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rfx1P48377 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Rfx1P48377 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rfx1P48377 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Rfx1P48377 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rfx1P48377 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC14.33□□□□□ -0.12
Rfx1P48377 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Rfx1P48377 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Rfx1P48377 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.33□□□□□ -0.12
Rfx1P48377 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Rfx1P48377 Gm12036-201ENSMUST00000120008 530 ntBASIC14.33□□□□□ -0.12
Rfx1P48377 Gm15806-201ENSMUST00000120696 955 ntBASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 82 ms