Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC11.53□□□□□ -0.56
Lire1P11260 Gm4768-201ENSMUST00000206199 686 ntBASIC11.53□□□□□ -0.56
Lire1P11260 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC11.53□□□□□ -0.56
Lire1P11260 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC11.53□□□□□ -0.56
Lire1P11260 Mir433-201ENSMUST00000093564 124 ntBASIC11.53□□□□□ -0.56
Lire1P11260 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC11.53□□□□□ -0.56
Lire1P11260 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Lire1P11260 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC11.53□□□□□ -0.56
Lire1P11260 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 C330027C09Rik-202ENSMUST00000117994 3977 ntTSL 5 BASIC11.53□□□□□ -0.56
Lire1P11260 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Lire1P11260 Gm38049-201ENSMUST00000195698 1372 ntBASIC11.53□□□□□ -0.56
Lire1P11260 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lire1P11260 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC11.52□□□□□ -0.56
Lire1P11260 Olfr1113-202ENSMUST00000215611 1949 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
Lire1P11260 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Lire1P11260 Gm42463-201ENSMUST00000198041 4886 ntBASIC11.52□□□□□ -0.56
Lire1P11260 Gm10465-201ENSMUST00000223133 3334 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Lire1P11260 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Lire1P11260 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Lire1P11260 Nop2-201ENSMUST00000044200 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Lire1P11260 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Lire1P11260 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Fam53b-207ENSMUST00000106169 4536 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Gm11591-201ENSMUST00000120063 702 ntBASIC11.52□□□□□ -0.57
Lire1P11260 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
Lire1P11260 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC11.52□□□□□ -0.57
Lire1P11260 Gm24548-201ENSMUST00000158650 108 ntBASIC11.52□□□□□ -0.57
Lire1P11260 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Lire1P11260 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Lire1P11260 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC11.52□□□□□ -0.57
Lire1P11260 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC11.52□□□□□ -0.57
Lire1P11260 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC11.52□□□□□ -0.57
Lire1P11260 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC11.52□□□□□ -0.57
Lire1P11260 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Calr-201ENSMUST00000003912 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Armcx2-202ENSMUST00000113193 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Rnf41-201ENSMUST00000096386 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Kcnn3-201ENSMUST00000000811 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC11.52□□□□□ -0.57
Lire1P11260 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Lire1P11260 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Timm10b-203ENSMUST00000106783 3273 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Lire1P11260 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lire1P11260 Oprm1-212ENSMUST00000105603 2053 ntTSL 5 BASIC11.51□□□□□ -0.57
Lire1P11260 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Gm11298-201ENSMUST00000120503 1799 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
Lire1P11260 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
Lire1P11260 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Lire1P11260 Tpx2-206ENSMUST00000164120 4365 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Lire1P11260 Gm44851-201ENSMUST00000205735 2309 ntBASIC11.51□□□□□ -0.57
Lire1P11260 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC11.51□□□□□ -0.57
Lire1P11260 Gm15370-201ENSMUST00000117158 253 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC11.51□□□□□ -0.57
Lire1P11260 Gm2991-201ENSMUST00000173338 480 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Gm6621-201ENSMUST00000193251 772 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Gm38158-201ENSMUST00000194617 339 ntBASIC11.51□□□□□ -0.57
Lire1P11260 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Gm6334-201ENSMUST00000207083 228 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Gm5781-201ENSMUST00000219792 443 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Lire1P11260 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Lire1P11260 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC11.51□□□□□ -0.57
Lire1P11260 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms