Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 AC123857.2-201ENSMUST00000225756 1582 ntBASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Mir877-201ENSMUST00000104738 85 ntBASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Gm12012-201ENSMUST00000118857 1066 ntBASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Gm4819-201ENSMUST00000182170 1009 ntBASIC13.12□□□□□ -0.31
Chmp6P0C0A3 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC13.12□□□□□ -0.31
Chmp6P0C0A3 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Gm44651-201ENSMUST00000207343 372 ntBASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Gm9996-201ENSMUST00000070359 913 ntBASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Arhgef3-204ENSMUST00000225949 3198 ntBASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Gm18983-201ENSMUST00000222884 2729 ntBASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 AC122197.2-201ENSMUST00000219196 1635 ntBASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Gm12749-201ENSMUST00000122138 1159 ntBASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Gm5070-201ENSMUST00000177599 862 ntBASIC13.11□□□□□ -0.31
Chmp6P0C0A3 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 AC153974.2-201ENSMUST00000218577 1025 ntBASIC13.11□□□□□ -0.31
Chmp6P0C0A3 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Gm43174-201ENSMUST00000195914 2445 ntBASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chmp6P0C0A3 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm37437-201ENSMUST00000194451 1937 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm24830-201ENSMUST00000102024 166 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms