Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Zfp68-203ENSMUST00000110905 4749 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC9.94□□□□□ -0.82
Hmgb3O54879 Tenm4-201ENSMUST00000107162 11021 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Shroom2-202ENSMUST00000101141 7494 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Rab3c-202ENSMUST00000223922 2398 ntBASIC9.94□□□□□ -0.82
Hmgb3O54879 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC9.94□□□□□ -0.82
Hmgb3O54879 Mllt10-201ENSMUST00000028076 4917 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Pld1-201ENSMUST00000067757 4804 ntAPPRIS P2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Snhg11-201ENSMUST00000109488 5864 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Slf2-201ENSMUST00000096053 6880 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Aen-203ENSMUST00000107425 4956 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Herc6-201ENSMUST00000031817 4767 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Notch2-201ENSMUST00000079812 10500 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Gm38376-201ENSMUST00000195493 2253 ntBASIC9.93□□□□□ -0.82
Hmgb3O54879 Igf2bp1-201ENSMUST00000013559 8378 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Thsd4-201ENSMUST00000034829 4816 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Gm24231-201ENSMUST00000104315 133 ntBASIC9.93□□□□□ -0.82
Hmgb3O54879 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Gm12341-201ENSMUST00000119724 503 ntBASIC9.93□□□□□ -0.82
Hmgb3O54879 Gm15321-201ENSMUST00000121290 288 ntBASIC9.93□□□□□ -0.82
Hmgb3O54879 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Gm15429-201ENSMUST00000151268 798 ntBASIC9.93□□□□□ -0.82
Hmgb3O54879 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Kalrn-205ENSMUST00000114953 4722 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Ntrk2-207ENSMUST00000225488 4706 ntAPPRIS P1 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Gm43267-201ENSMUST00000199664 1796 ntBASIC9.93□□□□□ -0.82
Hmgb3O54879 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Hmgb3O54879 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
Hmgb3O54879 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Mgat4a-201ENSMUST00000042161 7030 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Mst1r-201ENSMUST00000035203 4722 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Fgf6-201ENSMUST00000000187 4657 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Prdm10-204ENSMUST00000215499 6772 ntAPPRIS ALT2 TSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Gm22189-201ENSMUST00000103822 86 ntBASIC9.92□□□□□ -0.82
Hmgb3O54879 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Gm14719-201ENSMUST00000121891 340 ntBASIC9.92□□□□□ -0.82
Hmgb3O54879 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC9.92□□□□□ -0.82
Hmgb3O54879 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC9.92□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 197 ms