Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Gstp-ps-201ENSMUST00000195526 631 ntBASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Gm18916-201ENSMUST00000198264 1246 ntBASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 AC138604.1-201ENSMUST00000226969 739 ntBASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC13.54□□□□□ -0.24
Smc1aQ9CU62 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 CT009713.10-201ENSMUST00000225013 1986 ntBASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Gm13570-201ENSMUST00000140763 309 ntBASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Gm22902-201ENSMUST00000158488 302 ntBASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Gm9061-201ENSMUST00000182707 1006 ntBASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Mir6979-201ENSMUST00000183927 56 ntBASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Gm22058-201ENSMUST00000083393 310 ntBASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Ptprm-203ENSMUST00000224091 3773 ntBASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Smc1aQ9CU62 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Smc1aQ9CU62 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Smc1aQ9CU62 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.24
Smc1aQ9CU62 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Smc1aQ9CU62 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Smc1aQ9CU62 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Smc1aQ9CU62 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Gm23363-201ENSMUST00000175024 79 ntBASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Gm3096-201ENSMUST00000185770 364 ntBASIC13.52□□□□□ -0.25
Smc1aQ9CU62 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 AC166051.1-201ENSMUST00000214313 210 ntBASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Abhd11os-203ENSMUST00000222613 363 ntBASIC13.52□□□□□ -0.25
Smc1aQ9CU62 AC161537.1-201ENSMUST00000226199 1015 ntBASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Gm5846-201ENSMUST00000193146 1414 ntBASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Gm37737-201ENSMUST00000195013 1638 ntBASIC13.52□□□□□ -0.25
Smc1aQ9CU62 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 64.1 ms