Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Gm11509-201ENSMUST00000117358 325 ntBASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Gm10051-201ENSMUST00000145209 414 ntBASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Gm42682-201ENSMUST00000198349 1265 ntBASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Gm45770-201ENSMUST00000212105 616 ntBASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Gm18556-201ENSMUST00000219748 1031 ntBASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Gm10288-201ENSMUST00000084614 537 ntBASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Gm12857-201ENSMUST00000117678 592 ntBASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Gm12164-201ENSMUST00000121695 551 ntBASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Gm5733-201ENSMUST00000190232 939 ntBASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 AC098716.1-201ENSMUST00000213527 703 ntBASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 AC125486.1-201ENSMUST00000218701 320 ntBASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sf3b1Q99NB9 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 CT025624.1-201ENSMUST00000224007 2700 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm44260-201ENSMUST00000204946 2094 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm8566-201ENSMUST00000120174 465 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm14247-201ENSMUST00000120950 237 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm7467-201ENSMUST00000185173 652 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm4034-201ENSMUST00000187674 480 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Ighv1-48-201ENSMUST00000191795 294 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm37246-201ENSMUST00000192665 835 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm37835-201ENSMUST00000193305 361 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Ginm1-202ENSMUST00000065124 300 ntBASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms