Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Gm10076-201ENSMUST00000073238 384 ntBASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Gm25857-201ENSMUST00000082788 129 ntBASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ccdc40Q8BI79 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Usp44-202ENSMUST00000216224 2449 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Gm9083-201ENSMUST00000120423 819 ntBASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 AY702102-202ENSMUST00000194651 1173 ntBASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 AC166349.1-201ENSMUST00000220866 695 ntBASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 AC159195.3-201ENSMUST00000225162 2211 ntBASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ccdc40Q8BI79 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
Ccdc40Q8BI79 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC12.65□□□□□ -0.39
Ccdc40Q8BI79 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Gm27390-201ENSMUST00000184516 176 ntBASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Gm39404-201ENSMUST00000216350 313 ntBASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 AC153962.4-201ENSMUST00000217878 242 ntBASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 AC153974.2-201ENSMUST00000218577 1025 ntBASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 CU024892.2-201ENSMUST00000224608 832 ntBASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ccdc40Q8BI79 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms