Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Gm3017-201ENSMUST00000203603 1126 ntBASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Gm18059-201ENSMUST00000208073 580 ntBASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Ap3s1-202ENSMUST00000224622 978 ntBASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Gm8325-201ENSMUST00000099086 453 ntBASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Gm11422-201ENSMUST00000118925 1103 ntBASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Gm35713-201ENSMUST00000210516 199 ntBASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Gm45410-201ENSMUST00000211331 1093 ntBASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Gm18041-201ENSMUST00000218210 618 ntBASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx55Q6ZPL9 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Gm9089-201ENSMUST00000122027 526 ntBASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 CT030653.1-201ENSMUST00000224382 1279 ntBASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 2124.3 ms