Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm11956-201ENSMUST00000119525 512 ntBASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm13263-201ENSMUST00000121271 838 ntBASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm11354-201ENSMUST00000121974 422 ntBASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm13965-201ENSMUST00000154834 576 ntTSL 3 BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm42779-201ENSMUST00000198807 406 ntBASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm19009-201ENSMUST00000223072 823 ntBASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ccdc88aQ5SNZ0 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm44831-201ENSMUST00000208469 2989 ntBASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm9796-201ENSMUST00000062249 2250 ntBASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm21092-201ENSMUST00000178995 955 ntBASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm44152-201ENSMUST00000205007 1691 ntBASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 AC129931.1-201ENSMUST00000228865 1861 ntBASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc88aQ5SNZ0 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm13916-201ENSMUST00000117368 628 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm12969-201ENSMUST00000120199 1004 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm29499-201ENSMUST00000189151 486 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm28329-201ENSMUST00000191208 689 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm29171-201ENSMUST00000191397 486 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm5100-201ENSMUST00000195631 589 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm44329-201ENSMUST00000197469 112 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 CT485606.1-201ENSMUST00000213187 878 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms