Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Col1a1P11087 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Col1a1P11087 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.96□□□□□ -0.17
Col1a1P11087 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC13.96□□□□□ -0.17
Col1a1P11087 Rpl10-ps1-201ENSMUST00000119438 645 ntBASIC13.96□□□□□ -0.17
Col1a1P11087 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC13.96□□□□□ -0.17
Col1a1P11087 Gm22146-201ENSMUST00000157397 288 ntBASIC13.96□□□□□ -0.17
Col1a1P11087 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
Col1a1P11087 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC13.96□□□□□ -0.17
Col1a1P11087 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC13.96□□□□□ -0.17
Col1a1P11087 Gm30671-201ENSMUST00000214898 318 ntBASIC13.96□□□□□ -0.17
Col1a1P11087 AC156568.1-201ENSMUST00000223018 712 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 CT010506.1-201ENSMUST00000223673 349 ntBASIC13.96□□□□□ -0.17
Col1a1P11087 AC164437.3-201ENSMUST00000228323 347 ntBASIC13.96□□□□□ -0.17
Col1a1P11087 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC13.96□□□□□ -0.17
Col1a1P11087 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
Col1a1P11087 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col1a1P11087 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Col1a1P11087 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.96□□□□□ -0.18
Col1a1P11087 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col1a1P11087 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Col1a1P11087 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.18
Col1a1P11087 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col1a1P11087 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Col1a1P11087 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col1a1P11087 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC13.95□□□□□ -0.18
Col1a1P11087 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Col1a1P11087 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Col1a1P11087 Gm18294-201ENSMUST00000176980 1748 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC13.95□□□□□ -0.18
Col1a1P11087 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.95□□□□□ -0.18
Col1a1P11087 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Col1a1P11087 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Col1a1P11087 Gm14395-201ENSMUST00000120494 563 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC13.95□□□□□ -0.18
Col1a1P11087 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC13.95□□□□□ -0.18
Col1a1P11087 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC13.95□□□□□ -0.18
Col1a1P11087 Gm7741-201ENSMUST00000181445 989 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 Gm37826-201ENSMUST00000195329 322 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC13.95□□□□□ -0.18
Col1a1P11087 Gm7082-201ENSMUST00000209880 969 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 Gm18706-201ENSMUST00000210053 1066 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 Gm3433-201ENSMUST00000210149 1058 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 CT573047.1-201ENSMUST00000223652 851 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 n-R5s185-201ENSMUST00000083953 119 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Col1a1P11087 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Col1a1P11087 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Col1a1P11087 Gm38094-201ENSMUST00000195864 2978 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Gm37437-201ENSMUST00000194451 1937 ntBASIC13.95□□□□□ -0.18
Col1a1P11087 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col1a1P11087 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Col1a1P11087 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col1a1P11087 E330011O21Rik-202ENSMUST00000209498 1403 ntTSL 5 BASIC13.94□□□□□ -0.18
Col1a1P11087 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col1a1P11087 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC13.94□□□□□ -0.18
Col1a1P11087 Gm11500-201ENSMUST00000118237 601 ntBASIC13.94□□□□□ -0.18
Col1a1P11087 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC13.94□□□□□ -0.18
Col1a1P11087 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col1a1P11087 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col1a1P11087 Gm17192-201ENSMUST00000169031 511 ntBASIC13.94□□□□□ -0.18
Col1a1P11087 Nudt12-203ENSMUST00000174122 1244 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col1a1P11087 Gm26982-201ENSMUST00000182250 1151 ntBASIC13.94□□□□□ -0.18
Col1a1P11087 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col1a1P11087 Gm6114-201ENSMUST00000182472 968 ntBASIC13.94□□□□□ -0.18
Col1a1P11087 Gm28833-201ENSMUST00000189671 559 ntBASIC13.94□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms