Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC9.96□□□□□ -0.82
Hmgb3O54879 Gm45195-201ENSMUST00000205597 1008 ntBASIC9.96□□□□□ -0.82
Hmgb3O54879 AC132104.2-201ENSMUST00000215011 266 ntBASIC9.96□□□□□ -0.82
Hmgb3O54879 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Hmgb3O54879 AC165260.3-202ENSMUST00000224550 1031 ntBASIC9.96□□□□□ -0.82
Hmgb3O54879 Gm10371-202ENSMUST00000228010 1081 ntBASIC9.96□□□□□ -0.82
Hmgb3O54879 Hist1h2al-201ENSMUST00000091708 339 ntBASIC9.96□□□□□ -0.82
Hmgb3O54879 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC9.96□□□□□ -0.82
Hmgb3O54879 Fbxo43-201ENSMUST00000058643 4035 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Hmgb3O54879 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
Hmgb3O54879 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Hmgb3O54879 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
Hmgb3O54879 Ldb3-207ENSMUST00000227819 1499 ntBASIC9.96□□□□□ -0.82
Hmgb3O54879 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Hmgb3O54879 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC9.96□□□□□ -0.82
Hmgb3O54879 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.82
Hmgb3O54879 Camk2a-203ENSMUST00000102888 4970 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Hmgb3O54879 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC9.96□□□□□ -0.82
Hmgb3O54879 Adam22-204ENSMUST00000088761 9077 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.82
Hmgb3O54879 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Gm43102-201ENSMUST00000201004 2324 ntBASIC9.95□□□□□ -0.82
Hmgb3O54879 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Gm6152-201ENSMUST00000151704 340 ntBASIC9.95□□□□□ -0.82
Hmgb3O54879 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Gm27306-201ENSMUST00000183970 107 ntBASIC9.95□□□□□ -0.82
Hmgb3O54879 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Gm18307-201ENSMUST00000206864 949 ntBASIC9.95□□□□□ -0.82
Hmgb3O54879 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Pik3cd-202ENSMUST00000105688 4335 ntAPPRIS ALT1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Tpx2-206ENSMUST00000164120 4365 ntAPPRIS P1 TSL 5 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Ppp6r3-203ENSMUST00000172362 4633 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Gm14608-201ENSMUST00000120030 1553 ntBASIC9.95□□□□□ -0.82
Hmgb3O54879 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Ppfia1-202ENSMUST00000182226 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Hjurp-201ENSMUST00000054674 4878 ntAPPRIS P2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Phf20-201ENSMUST00000037401 5737 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC9.95□□□□□ -0.82
Hmgb3O54879 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hmgb3O54879 Srgap3-203ENSMUST00000113169 8300 ntTSL 5 BASIC9.94□□□□□ -0.82
Hmgb3O54879 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Gm38157-201ENSMUST00000194178 1698 ntBASIC9.94□□□□□ -0.82
Hmgb3O54879 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC9.94□□□□□ -0.82
Hmgb3O54879 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC9.94□□□□□ -0.82
Hmgb3O54879 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Gm14921-201ENSMUST00000118643 908 ntBASIC9.94□□□□□ -0.82
Hmgb3O54879 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC9.94□□□□□ -0.82
Hmgb3O54879 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
Hmgb3O54879 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Gm24694-201ENSMUST00000180054 110 ntBASIC9.94□□□□□ -0.82
Hmgb3O54879 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC9.94□□□□□ -0.82
Hmgb3O54879 Gm27663-201ENSMUST00000184839 110 ntBASIC9.94□□□□□ -0.82
Hmgb3O54879 Gm37171-201ENSMUST00000192636 1185 ntBASIC9.94□□□□□ -0.82
Hmgb3O54879 Gm5276-201ENSMUST00000196683 1047 ntBASIC9.94□□□□□ -0.82
Hmgb3O54879 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC9.94□□□□□ -0.82
Hmgb3O54879 AC124732.1-201ENSMUST00000221551 910 ntBASIC9.94□□□□□ -0.82
Hmgb3O54879 AC132863.2-201ENSMUST00000226643 799 ntBASIC9.94□□□□□ -0.82
Hmgb3O54879 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hmgb3O54879 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 277.5 ms