Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 AC122291.1-201ENSMUST00000228937 5748 ntBASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Gm13492-201ENSMUST00000119772 665 ntBASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Gm12363-201ENSMUST00000122250 668 ntBASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Gm18304-201ENSMUST00000189162 546 ntBASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 4631405K08Rik-201ENSMUST00000180420 2112 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Gm45428-201ENSMUST00000209619 1789 ntBASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ccdc28bQ8CEG5 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Rxra-206ENSMUST00000166775 3216 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Fhl1-204ENSMUST00000114772 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Gm7488-201ENSMUST00000117148 684 ntBASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Gm11597-201ENSMUST00000121423 964 ntBASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 AL593843.1-201ENSMUST00000195891 145 ntBASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 AC167013.1-201ENSMUST00000228592 202 ntBASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Sema4a-201ENSMUST00000029700 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC11.94□□□□□ -0.5
Ccdc28bQ8CEG5 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 Tcp10a-202ENSMUST00000128533 2589 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 Gm45206-201ENSMUST00000206885 2285 ntBASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC11.93□□□□□ -0.5
Ccdc28bQ8CEG5 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms