Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Ddx55Q6ZPL9 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Gm12816-201ENSMUST00000118069 1212 ntBASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Gm8459-201ENSMUST00000162504 760 ntBASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Gm44315-201ENSMUST00000203041 219 ntBASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 AC165154.1-201ENSMUST00000226661 340 ntBASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Gm25201-201ENSMUST00000083093 170 ntBASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Gm44942-201ENSMUST00000096093 2072 ntBASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx55Q6ZPL9 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Gm2420-201ENSMUST00000119864 2149 ntBASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Gm26134-201ENSMUST00000178484 110 ntBASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Gm8574-201ENSMUST00000203207 924 ntBASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Gm7940-201ENSMUST00000218195 769 ntBASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Gm9111-201ENSMUST00000219394 709 ntBASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Ddx55Q6ZPL9 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx55Q6ZPL9 Gm8155-201ENSMUST00000216363 1612 ntBASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 69 ms