Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Gm17281-201ENSMUST00000180732 3589 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.32□□□□□ -0.6
Trim40Q3UWA4 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Gm11637-201ENSMUST00000120601 592 ntBASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Gm16479-201ENSMUST00000121706 932 ntBASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Gm10156-201ENSMUST00000122364 462 ntBASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim40Q3UWA4 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Gm8515-201ENSMUST00000194852 576 ntBASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 AC159006.1-201ENSMUST00000226396 258 ntBASIC11.3□□□□□ -0.6
Trim40Q3UWA4 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Gm24526-201ENSMUST00000082921 158 ntBASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Gm8522-201ENSMUST00000118416 1929 ntBASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Gm37580-201ENSMUST00000192408 2800 ntBASIC11.3□□□□□ -0.6
Trim40Q3UWA4 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 71.7 ms