Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC13□□□□□ -0.33
Cpsf3Q9QXK7 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Gm37466-201ENSMUST00000195692 652 ntBASIC13□□□□□ -0.33
Cpsf3Q9QXK7 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Gm42599-201ENSMUST00000201308 469 ntBASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf3Q9QXK7 Gm36970-201ENSMUST00000193688 1859 ntBASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm5525-201ENSMUST00000190438 1312 ntBASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm23200-201ENSMUST00000104379 132 ntBASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm12217-201ENSMUST00000118858 696 ntBASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm16481-201ENSMUST00000119074 1227 ntBASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm27552-201ENSMUST00000183351 62 ntBASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm27844-201ENSMUST00000183613 62 ntBASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm28450-201ENSMUST00000187349 638 ntBASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm8956-201ENSMUST00000203939 825 ntBASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm270-201ENSMUST00000223010 976 ntBASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm7049-201ENSMUST00000223520 1712 ntBASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf3Q9QXK7 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Gm4909-201ENSMUST00000118749 794 ntBASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Gm15610-201ENSMUST00000120584 195 ntBASIC12.98□□□□□ -0.33
Cpsf3Q9QXK7 Gm17040-202ENSMUST00000170597 889 ntBASIC12.98□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms