Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Gzmn-202ENSMUST00000225535 989 ntBASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Gm8385-201ENSMUST00000058999 643 ntBASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Cdc40Q9DC48 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Gm43289-201ENSMUST00000200537 1475 ntBASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Lmo7-205ENSMUST00000159314 5774 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Gm14028-201ENSMUST00000117434 479 ntBASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Gm23119-201ENSMUST00000158610 140 ntBASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Mir6927-201ENSMUST00000184494 71 ntBASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Gm8856-201ENSMUST00000185254 1144 ntBASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Gm18304-201ENSMUST00000189162 546 ntBASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 AC098716.1-201ENSMUST00000213527 703 ntBASIC11.26□□□□□ -0.61
Cdc40Q9DC48 AC125209.1-201ENSMUST00000225812 766 ntBASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 AC123665.1-201ENSMUST00000228204 438 ntBASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Gm10076-201ENSMUST00000073238 384 ntBASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Gm37105-201ENSMUST00000192251 2085 ntBASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdc40Q9DC48 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Gm43908-201ENSMUST00000205074 1472 ntBASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 101.5 ms