Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Irf2-209ENSMUST00000210218 535 ntTSL 3 BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Cog3-203ENSMUST00000227473 4197 ntBASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Gm37472-201ENSMUST00000192342 4052 ntBASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim47Q8C0E3 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gm6189-201ENSMUST00000164487 2082 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gm43463-201ENSMUST00000195967 1803 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gm5419-201ENSMUST00000119301 527 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gm25116-201ENSMUST00000157191 122 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gm17040-202ENSMUST00000170597 889 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gm37436-201ENSMUST00000193842 1085 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gm17827-201ENSMUST00000211825 742 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gm28719-201ENSMUST00000187779 1757 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Ptprm-203ENSMUST00000224091 3773 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Gm42748-201ENSMUST00000199354 2341 ntBASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim47Q8C0E3 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Map1b-203ENSMUST00000223725 2669 ntBASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Gm26286-201ENSMUST00000104166 134 ntBASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Gm11511-201ENSMUST00000118146 540 ntBASIC13.43□□□□□ -0.26
Trim47Q8C0E3 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Elobl-203ENSMUST00000121228 704 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Gm5706-201ENSMUST00000181525 993 ntBASIC13.43□□□□□ -0.26
Trim47Q8C0E3 2010110E17Rik-201ENSMUST00000184161 879 ntBASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Gm28877-201ENSMUST00000191349 604 ntBASIC13.43□□□□□ -0.26
Trim47Q8C0E3 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Gm18730-201ENSMUST00000218038 343 ntBASIC13.43□□□□□ -0.26
Trim47Q8C0E3 AU017674-201ENSMUST00000222864 720 ntTSL 3 BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trim47Q8C0E3 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 61.2 ms