Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC10.82□□□□□ -0.68
Ube3dQ8BX13 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ube3dQ8BX13 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ube3dQ8BX13 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ube3dQ8BX13 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC10.82□□□□□ -0.68
Ube3dQ8BX13 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ube3dQ8BX13 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ube3dQ8BX13 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ube3dQ8BX13 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Ube3dQ8BX13 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Gm25214-201ENSMUST00000104573 129 ntBASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Gm15236-201ENSMUST00000117309 379 ntBASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Gm9176-201ENSMUST00000219955 1120 ntBASIC10.81□□□□□ -0.68
Ube3dQ8BX13 AC154634.3-201ENSMUST00000224589 736 ntBASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Gm10371-202ENSMUST00000228010 1081 ntBASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ube3dQ8BX13 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm37542-201ENSMUST00000192563 2832 ntBASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm23270-201ENSMUST00000104055 131 ntBASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm12058-201ENSMUST00000118614 437 ntBASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm16296-201ENSMUST00000159905 325 ntBASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 AC166095.1-201ENSMUST00000223731 1241 ntBASIC10.8□□□□□ -0.68
Ube3dQ8BX13 AC165260.3-202ENSMUST00000224550 1031 ntBASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Gm43984-201ENSMUST00000204572 2864 ntBASIC10.8□□□□□ -0.68
Ube3dQ8BX13 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 97.3 ms