Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Kcnk16-202ENSMUST00000225596 2127 ntBASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Gm18367-201ENSMUST00000176139 600 ntBASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Gm29499-201ENSMUST00000189151 486 ntBASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Gm28329-201ENSMUST00000191208 689 ntBASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Gm29171-201ENSMUST00000191397 486 ntBASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Usp40Q8BWR4 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Gm15725-201ENSMUST00000119947 1090 ntBASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Gm10731-201ENSMUST00000181171 448 ntBASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Gm5852-201ENSMUST00000194119 1021 ntBASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Gm43186-201ENSMUST00000198130 824 ntBASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 AC153505.1-201ENSMUST00000218819 1071 ntBASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Usp40Q8BWR4 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Usp40Q8BWR4 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Usp40Q8BWR4 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Usp40Q8BWR4 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Usp40Q8BWR4 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Usp40Q8BWR4 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC16.52■□□□□ 0.23
Usp40Q8BWR4 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
Usp40Q8BWR4 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Usp40Q8BWR4 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Usp40Q8BWR4 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Gm24844-201ENSMUST00000158679 127 ntBASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Gm9192-201ENSMUST00000183221 985 ntBASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms