Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gm23272-201ENSMUST00000104053 129 ntBASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gm11783-201ENSMUST00000119549 885 ntBASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gm12969-201ENSMUST00000120199 1004 ntBASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 n-R5s84-201ENSMUST00000122591 109 ntBASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gm17889-201ENSMUST00000198410 598 ntBASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gm9139-201ENSMUST00000218817 700 ntBASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx55Q6ZPL9 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Gm36970-201ENSMUST00000193688 1859 ntBASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Gm25766-201ENSMUST00000104101 131 ntBASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Gm9630-201ENSMUST00000178304 885 ntBASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Gm17798-201ENSMUST00000182282 1035 ntBASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Mir6407-201ENSMUST00000184510 101 ntBASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Gm9136-201ENSMUST00000193368 454 ntBASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Gm37981-201ENSMUST00000194280 535 ntBASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 CT009536.2-201ENSMUST00000225370 665 ntBASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Gm37348-201ENSMUST00000193104 1789 ntBASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Gm45266-201ENSMUST00000210111 2173 ntBASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx55Q6ZPL9 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 AC241621.2-201ENSMUST00000223991 2151 ntBASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Gm37324-201ENSMUST00000194500 4504 ntBASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Gm11980-201ENSMUST00000121445 986 ntBASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Gm9116-201ENSMUST00000192400 1018 ntBASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Gm43692-201ENSMUST00000198236 1062 ntBASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Gm6450-201ENSMUST00000200896 574 ntBASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Mir483-201ENSMUST00000093631 73 ntBASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx55Q6ZPL9 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ddx55Q6ZPL9 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC13.71□□□□□ -0.22
Ddx55Q6ZPL9 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ddx55Q6ZPL9 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ddx55Q6ZPL9 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ddx55Q6ZPL9 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Ddx55Q6ZPL9 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 81.9 ms