Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gm11964-201ENSMUST00000120982 444 ntBASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gm13546-201ENSMUST00000135735 401 ntTSL 5 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gm24548-201ENSMUST00000158650 108 ntBASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 AC122371.3-201ENSMUST00000223402 1061 ntBASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Mettl6-204ENSMUST00000227595 1027 ntBASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Gm10371-202ENSMUST00000228010 1081 ntBASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sh3rf1Q69ZI1 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Gm10434-201ENSMUST00000101158 471 ntBASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Gm21156-201ENSMUST00000189693 869 ntBASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 CT025533.2-201ENSMUST00000228715 1248 ntBASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sh3rf1Q69ZI1 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms