Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Usf1Q61069 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC11.04□□□□□ -0.64
Usf1Q61069 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm9361-201ENSMUST00000198695 1507 ntBASIC11.04□□□□□ -0.64
Usf1Q61069 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm43045-201ENSMUST00000198725 2095 ntBASIC11.04□□□□□ -0.64
Usf1Q61069 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Usf1Q61069 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Usf1Q61069 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Usf1Q61069 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Gm43267-201ENSMUST00000199664 1796 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC11.03□□□□□ -0.64
Usf1Q61069 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Gm7278-201ENSMUST00000119836 1401 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Usf1Q61069 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC11.03□□□□□ -0.64
Usf1Q61069 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC11.03□□□□□ -0.64
Usf1Q61069 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Gm12579-201ENSMUST00000118040 783 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 Gm12816-201ENSMUST00000118069 1212 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 Gm15207-201ENSMUST00000119259 442 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 Gm14760-201ENSMUST00000121831 999 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC11.03□□□□□ -0.64
Usf1Q61069 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC11.03□□□□□ -0.64
Usf1Q61069 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC11.03□□□□□ -0.64
Usf1Q61069 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Gm3551-201ENSMUST00000190750 664 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 Gm43692-201ENSMUST00000198236 1062 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Usf1Q61069 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 AC113082.1-201ENSMUST00000217324 327 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC11.03□□□□□ -0.64
Usf1Q61069 Gm9661-201ENSMUST00000221611 1122 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 AC165260.2-203ENSMUST00000224237 336 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 AC093022.5-201ENSMUST00000226841 1079 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Usf1Q61069 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Usf1Q61069 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Usf1Q61069 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Gm10152-201ENSMUST00000193475 1344 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC11.03□□□□□ -0.64
Usf1Q61069 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC11.03□□□□□ -0.64
Usf1Q61069 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Usf1Q61069 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Usf1Q61069 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
Usf1Q61069 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Usf1Q61069 Gm18198-201ENSMUST00000204986 1551 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 AC154671.1-201ENSMUST00000228617 1578 ntBASIC11.03□□□□□ -0.64
Usf1Q61069 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Usf1Q61069 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.64
Usf1Q61069 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Usf1Q61069 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Usf1Q61069 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Usf1Q61069 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Usf1Q61069 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.64
Usf1Q61069 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
Usf1Q61069 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Usf1Q61069 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Usf1Q61069 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Usf1Q61069 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC11.02□□□□□ -0.65
Usf1Q61069 Gm11801-201ENSMUST00000117807 746 ntBASIC11.02□□□□□ -0.65
Usf1Q61069 Gm14219-201ENSMUST00000120414 288 ntBASIC11.02□□□□□ -0.65
Usf1Q61069 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC11.02□□□□□ -0.65
Usf1Q61069 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms