Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Gm13142-201ENSMUST00000117213 1453 ntBASIC10.36□□□□□ -0.75
Col8a1Q00780 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Col8a1Q00780 AC154747.3-201ENSMUST00000224471 3470 ntBASIC10.36□□□□□ -0.75
Col8a1Q00780 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC10.36□□□□□ -0.75
Col8a1Q00780 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC10.36□□□□□ -0.75
Col8a1Q00780 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC10.36□□□□□ -0.75
Col8a1Q00780 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC10.36□□□□□ -0.75
Col8a1Q00780 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Gm43520-201ENSMUST00000197996 164 ntBASIC10.36□□□□□ -0.75
Col8a1Q00780 Gm43610-201ENSMUST00000199117 365 ntBASIC10.36□□□□□ -0.75
Col8a1Q00780 AC153954.1-201ENSMUST00000216959 255 ntBASIC10.36□□□□□ -0.75
Col8a1Q00780 Gm19994-201ENSMUST00000217086 586 ntBASIC10.36□□□□□ -0.75
Col8a1Q00780 Arhgef33-207ENSMUST00000224966 490 ntBASIC10.36□□□□□ -0.75
Col8a1Q00780 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Col8a1Q00780 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC10.36□□□□□ -0.75
Col8a1Q00780 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC10.36□□□□□ -0.75
Col8a1Q00780 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Col8a1Q00780 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col8a1Q00780 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Col8a1Q00780 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Col8a1Q00780 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Col8a1Q00780 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
Col8a1Q00780 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC10.35□□□□□ -0.75
Col8a1Q00780 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC10.35□□□□□ -0.75
Col8a1Q00780 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm15725-201ENSMUST00000119947 1090 ntBASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm12990-201ENSMUST00000120372 468 ntBASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm5863-201ENSMUST00000121760 1008 ntBASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC10.35□□□□□ -0.75
Col8a1Q00780 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm28686-201ENSMUST00000187404 609 ntBASIC10.35□□□□□ -0.75
Col8a1Q00780 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm9645-201ENSMUST00000197131 792 ntBASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm43184-201ENSMUST00000197247 542 ntBASIC10.35□□□□□ -0.75
Col8a1Q00780 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC10.35□□□□□ -0.75
Col8a1Q00780 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm6430-201ENSMUST00000054664 1248 ntBASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm5455-201ENSMUST00000058710 715 ntBASIC10.35□□□□□ -0.75
Col8a1Q00780 Gm25201-201ENSMUST00000083093 170 ntBASIC10.35□□□□□ -0.75
Col8a1Q00780 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
Col8a1Q00780 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
Col8a1Q00780 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC10.35□□□□□ -0.75
Col8a1Q00780 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col8a1Q00780 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms