Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC13.08□□□□□ -0.32
RaraP11416 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
RaraP11416 Gm8801-201ENSMUST00000173255 1064 ntBASIC13.08□□□□□ -0.32
RaraP11416 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC13.08□□□□□ -0.32
RaraP11416 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC13.08□□□□□ -0.32
RaraP11416 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Gm9396-201ENSMUST00000076703 567 ntBASIC13.08□□□□□ -0.32
RaraP11416 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC13.08□□□□□ -0.32
RaraP11416 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC13.08□□□□□ -0.32
RaraP11416 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC13.08□□□□□ -0.32
RaraP11416 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
RaraP11416 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
RaraP11416 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RaraP11416 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
RaraP11416 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
RaraP11416 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
RaraP11416 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
RaraP11416 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
RaraP11416 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
RaraP11416 Mir1247-201ENSMUST00000116706 82 ntBASIC13.07□□□□□ -0.32
RaraP11416 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Gm14832-201ENSMUST00000121289 322 ntBASIC13.07□□□□□ -0.32
RaraP11416 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC13.07□□□□□ -0.32
RaraP11416 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC13.07□□□□□ -0.32
RaraP11416 Gm5597-201ENSMUST00000182353 1193 ntBASIC13.07□□□□□ -0.32
RaraP11416 Gm21156-201ENSMUST00000189693 869 ntBASIC13.07□□□□□ -0.32
RaraP11416 Gm18711-201ENSMUST00000199341 750 ntBASIC13.07□□□□□ -0.32
RaraP11416 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
RaraP11416 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
RaraP11416 Gm45776-201ENSMUST00000212366 1522 ntBASIC13.07□□□□□ -0.32
RaraP11416 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
RaraP11416 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
RaraP11416 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC13.07□□□□□ -0.32
RaraP11416 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RaraP11416 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC13.06□□□□□ -0.32
RaraP11416 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
RaraP11416 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Gm18626-201ENSMUST00000221512 1409 ntBASIC13.06□□□□□ -0.32
RaraP11416 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Gm44152-201ENSMUST00000205007 1691 ntBASIC13.06□□□□□ -0.32
RaraP11416 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
RaraP11416 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
RaraP11416 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
RaraP11416 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Gm13829-201ENSMUST00000119600 138 ntBASIC13.06□□□□□ -0.32
RaraP11416 Mir1982-201ENSMUST00000157368 74 ntBASIC13.06□□□□□ -0.32
RaraP11416 Gm42693-201ENSMUST00000196779 631 ntBASIC13.06□□□□□ -0.32
RaraP11416 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC13.06□□□□□ -0.32
RaraP11416 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Gm5950-201ENSMUST00000213337 772 ntBASIC13.06□□□□□ -0.32
RaraP11416 AC153929.1-201ENSMUST00000219009 303 ntBASIC13.06□□□□□ -0.32
RaraP11416 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC13.06□□□□□ -0.32
RaraP11416 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC13.06□□□□□ -0.32
RaraP11416 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
RaraP11416 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC13.06□□□□□ -0.32
RaraP11416 Gm43417-201ENSMUST00000201586 5207 ntBASIC13.06□□□□□ -0.32
RaraP11416 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Gm38194-201ENSMUST00000194529 2211 ntBASIC13.06□□□□□ -0.32
RaraP11416 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
RaraP11416 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RaraP11416 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 71.2 ms