Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 AC166344.1-202ENSMUST00000224139 234 ntBASIC9.63□□□□□ -0.87
Hoxd3P09027 AC242269.1-201ENSMUST00000227020 741 ntBASIC9.63□□□□□ -0.87
Hoxd3P09027 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm9972-201ENSMUST00000069051 1533 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm42863-201ENSMUST00000197875 2958 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm14130-201ENSMUST00000118417 987 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Cep97-204ENSMUST00000121129 989 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm14603-201ENSMUST00000121275 448 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm14832-201ENSMUST00000121289 322 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm15680-201ENSMUST00000161597 465 ntTSL 5 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm7247-201ENSMUST00000162998 1157 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Vmn1r169-201ENSMUST00000170290 915 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm8494-201ENSMUST00000178171 1233 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm8885-201ENSMUST00000189382 598 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm9678-201ENSMUST00000198979 1149 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm44651-201ENSMUST00000207343 372 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Olfr153-201ENSMUST00000217113 1258 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC9.62□□□□□ -0.87
Hoxd3P09027 CT030182.1-201ENSMUST00000225935 533 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm10371-202ENSMUST00000228010 1081 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm37234-201ENSMUST00000193259 1441 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm45832-201ENSMUST00000212762 1443 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm43858-201ENSMUST00000199418 1778 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 AC126444.1-201ENSMUST00000225938 1768 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm45706-201ENSMUST00000213063 2136 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Gm42840-201ENSMUST00000200303 2251 ntBASIC9.62□□□□□ -0.87
Hoxd3P09027 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms