Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 Gm8342-201ENSMUST00000209839 757 ntBASIC14.29□□□□□ -0.12
Col3a1P08121 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC14.29□□□□□ -0.12
Col3a1P08121 AC118639.2-201ENSMUST00000226289 223 ntBASIC14.29□□□□□ -0.12
Col3a1P08121 Gm6430-201ENSMUST00000054664 1248 ntBASIC14.29□□□□□ -0.12
Col3a1P08121 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Col3a1P08121 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 Gm1840-201ENSMUST00000051687 1432 ntBASIC14.29□□□□□ -0.12
Col3a1P08121 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Col3a1P08121 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC14.28□□□□□ -0.12
Col3a1P08121 Gm45199-201ENSMUST00000207640 1507 ntBASIC14.28□□□□□ -0.12
Col3a1P08121 Gm23272-201ENSMUST00000104053 129 ntBASIC14.28□□□□□ -0.12
Col3a1P08121 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC14.28□□□□□ -0.12
Col3a1P08121 AC124433.1-201ENSMUST00000224483 1063 ntBASIC14.28□□□□□ -0.12
Col3a1P08121 Gm4978-201ENSMUST00000071565 801 ntBASIC14.28□□□□□ -0.12
Col3a1P08121 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
Col3a1P08121 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col3a1P08121 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Col3a1P08121 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Gm14942-201ENSMUST00000119642 336 ntBASIC14.27□□□□□ -0.12
Col3a1P08121 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC14.27□□□□□ -0.12
Col3a1P08121 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Gm18159-201ENSMUST00000174516 1070 ntBASIC14.27□□□□□ -0.12
Col3a1P08121 Gm27910-201ENSMUST00000185004 107 ntBASIC14.27□□□□□ -0.12
Col3a1P08121 Gm29155-201ENSMUST00000185910 269 ntBASIC14.27□□□□□ -0.12
Col3a1P08121 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC14.27□□□□□ -0.12
Col3a1P08121 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
Col3a1P08121 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col3a1P08121 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC14.27□□□□□ -0.13
Col3a1P08121 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col3a1P08121 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Gm11675-201ENSMUST00000121873 832 ntBASIC14.26□□□□□ -0.13
Col3a1P08121 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC14.26□□□□□ -0.13
Col3a1P08121 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC14.26□□□□□ -0.13
Col3a1P08121 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC14.26□□□□□ -0.13
Col3a1P08121 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC14.26□□□□□ -0.13
Col3a1P08121 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Col3a1P08121 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Col3a1P08121 Gm44158-201ENSMUST00000203881 505 ntBASIC14.26□□□□□ -0.13
Col3a1P08121 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 63.4 ms