Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
Hmgb3O54879 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC10□□□□□ -0.81
Hmgb3O54879 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC10□□□□□ -0.81
Hmgb3O54879 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Gm44062-201ENSMUST00000203312 4857 ntBASIC10□□□□□ -0.81
Hmgb3O54879 Dock4-204ENSMUST00000220912 7360 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Gm6736-201ENSMUST00000166583 948 ntBASIC10□□□□□ -0.81
Hmgb3O54879 Gm5354-201ENSMUST00000182417 973 ntBASIC10□□□□□ -0.81
Hmgb3O54879 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC10□□□□□ -0.81
Hmgb3O54879 Gm35960-201ENSMUST00000202712 767 ntBASIC10□□□□□ -0.81
Hmgb3O54879 AC098716.1-201ENSMUST00000213527 703 ntBASIC10□□□□□ -0.81
Hmgb3O54879 AC139382.1-201ENSMUST00000221402 498 ntBASIC10□□□□□ -0.81
Hmgb3O54879 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Gm15544-201ENSMUST00000118776 1531 ntBASIC10□□□□□ -0.81
Hmgb3O54879 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC10□□□□□ -0.81
Hmgb3O54879 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Lama3-201ENSMUST00000092070 10548 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
Hmgb3O54879 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Hmgb3O54879 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC10□□□□□ -0.81
Hmgb3O54879 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC10□□□□□ -0.81
Hmgb3O54879 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Pofut1-207ENSMUST00000152390 4833 ntTSL 2 BASIC10□□□□□ -0.81
Hmgb3O54879 Gm5878-201ENSMUST00000113802 4643 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC10□□□□□ -0.81
Hmgb3O54879 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Ifih1-201ENSMUST00000028259 5470 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Celf1-203ENSMUST00000068747 7614 ntAPPRIS ALT1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC9.99□□□□□ -0.81
Hmgb3O54879 Retreg1-206ENSMUST00000228306 1430 ntBASIC9.99□□□□□ -0.81
Hmgb3O54879 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC9.99□□□□□ -0.81
Hmgb3O54879 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC9.99□□□□□ -0.81
Hmgb3O54879 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Armc1-201ENSMUST00000029125 3673 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Tgfbrap1-201ENSMUST00000095014 5607 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Dysf-211ENSMUST00000168387 6501 ntTSL 5 BASIC9.99□□□□□ -0.81
Hmgb3O54879 Klhl18-205ENSMUST00000198400 4638 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Gm10576-201ENSMUST00000191927 825 ntBASIC9.99□□□□□ -0.81
Hmgb3O54879 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Gm6983-201ENSMUST00000214912 628 ntBASIC9.99□□□□□ -0.81
Hmgb3O54879 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Fnbp1-201ENSMUST00000073879 8469 ntTSL 5 BASIC9.99□□□□□ -0.81
Hmgb3O54879 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC9.99□□□□□ -0.81
Hmgb3O54879 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC9.99□□□□□ -0.81
Hmgb3O54879 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC9.99□□□□□ -0.81
Hmgb3O54879 Gm2128-201ENSMUST00000108009 2560 ntBASIC9.99□□□□□ -0.81
Hmgb3O54879 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC9.99□□□□□ -0.81
Hmgb3O54879 Gm38049-201ENSMUST00000195698 1372 ntBASIC9.99□□□□□ -0.81
Hmgb3O54879 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC9.99□□□□□ -0.81
Hmgb3O54879 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC9.99□□□□□ -0.81
Hmgb3O54879 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Hmgb3O54879 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Ctnnd1-217ENSMUST00000111691 5380 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 AC160405.1-201ENSMUST00000218207 1545 ntBASIC9.98□□□□□ -0.81
Hmgb3O54879 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Add2-209ENSMUST00000204059 8182 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 137.3 ms