Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Pcdh1F7BJK1 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Pcdh1F7BJK1 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Pcdh1F7BJK1 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Pcdh1F7BJK1 Gm38194-201ENSMUST00000194529 2211 ntBASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Gm6157-201ENSMUST00000199935 1897 ntBASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Gm44405-201ENSMUST00000198952 126 ntBASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Gm45691-201ENSMUST00000206905 1120 ntBASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Gm45925-201ENSMUST00000218882 744 ntBASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Pcdh1F7BJK1 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 4930433J02Rik-201ENSMUST00000194719 1386 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC10.9□□□□□ -0.67
Pcdh1F7BJK1 Gm38376-201ENSMUST00000195493 2253 ntBASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Gm38055-201ENSMUST00000195353 2217 ntBASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 BC043934-202ENSMUST00000185694 2356 ntBASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Gm13342-201ENSMUST00000121055 207 ntBASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Gm9136-201ENSMUST00000193368 454 ntBASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Gm37748-201ENSMUST00000194379 1140 ntBASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Gm42442-201ENSMUST00000197951 1133 ntBASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Gm39404-201ENSMUST00000216350 313 ntBASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Gm10076-201ENSMUST00000073238 384 ntBASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC10.89□□□□□ -0.67
Pcdh1F7BJK1 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms