Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Scn11aQ9R053 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gm13549-201ENSMUST00000118339 796 ntBASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gm6630-201ENSMUST00000119199 454 ntBASIC14.14□□□□□ -0.15
Scn11aQ9R053 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gm5100-201ENSMUST00000195631 589 ntBASIC14.14□□□□□ -0.15
Scn11aQ9R053 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC14.14□□□□□ -0.15
Scn11aQ9R053 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 AC164702.1-201ENSMUST00000220135 2212 ntBASIC14.14□□□□□ -0.15
Scn11aQ9R053 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gm43242-201ENSMUST00000199507 1776 ntBASIC14.14□□□□□ -0.15
Scn11aQ9R053 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gm18460-201ENSMUST00000208088 464 ntBASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 AC153962.2-201ENSMUST00000219417 550 ntBASIC14.14□□□□□ -0.15
Scn11aQ9R053 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gm6430-201ENSMUST00000054664 1248 ntBASIC14.14□□□□□ -0.15
Scn11aQ9R053 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Scn11aQ9R053 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Gm43365-201ENSMUST00000196522 2106 ntBASIC14.13□□□□□ -0.15
Scn11aQ9R053 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Gm18201-201ENSMUST00000174735 875 ntBASIC14.13□□□□□ -0.15
Scn11aQ9R053 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Gm17825-201ENSMUST00000206836 794 ntBASIC14.13□□□□□ -0.15
Scn11aQ9R053 Gm18706-201ENSMUST00000210053 1066 ntBASIC14.13□□□□□ -0.15
Scn11aQ9R053 AC164618.2-201ENSMUST00000224770 573 ntBASIC14.13□□□□□ -0.15
Scn11aQ9R053 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
Scn11aQ9R053 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.13□□□□□ -0.15
Scn11aQ9R053 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms