Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Mthfr-201ENSMUST00000069604 6072 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 AC126262.1-201ENSMUST00000221802 1904 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm5846-201ENSMUST00000193146 1414 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm43721-201ENSMUST00000199677 2313 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm2673-201ENSMUST00000120958 1608 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm14999-201ENSMUST00000121039 624 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm25700-201ENSMUST00000177693 110 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm9022-201ENSMUST00000182482 992 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gstp-ps-201ENSMUST00000195526 631 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm3786-201ENSMUST00000202659 378 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm45186-201ENSMUST00000206874 478 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm8712-201ENSMUST00000221090 701 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Zdbf2-202ENSMUST00000114132 12629 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm9333-201ENSMUST00000205452 1323 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 CT009757.3-201ENSMUST00000223367 2320 ntBASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdc40Q9DC48 Gm38187-201ENSMUST00000195609 4709 ntBASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Ptprm-203ENSMUST00000224091 3773 ntBASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm44758-201ENSMUST00000206096 2068 ntBASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm5884-201ENSMUST00000036712 1479 ntBASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm11439-201ENSMUST00000118598 409 ntBASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm13570-201ENSMUST00000140763 309 ntBASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Gm19208-201ENSMUST00000213861 912 ntBASIC11.28□□□□□ -0.6
Cdc40Q9DC48 AC154222.2-201ENSMUST00000225848 607 ntBASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 AC126444.1-201ENSMUST00000225938 1768 ntBASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Nos1-206ENSMUST00000142742 10123 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Cdc40Q9DC48 AC122291.1-201ENSMUST00000228937 5748 ntBASIC11.28□□□□□ -0.6
Cdc40Q9DC48 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC11.27□□□□□ -0.6
Cdc40Q9DC48 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 67.1 ms