Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Dgkh-202ENSMUST00000226342 15261 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Gm43818-201ENSMUST00000200605 466 ntBASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 AC169036.1-201ENSMUST00000227994 296 ntBASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Gm26035-201ENSMUST00000083065 308 ntBASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Rxra-206ENSMUST00000166775 3216 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Tnxb-201ENSMUST00000087399 12209 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 AC154517.2-201ENSMUST00000220829 2458 ntBASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Gm38055-201ENSMUST00000195353 2217 ntBASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Gm45496-201ENSMUST00000209918 2917 ntBASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Piezo2-202ENSMUST00000047480 10724 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Pnkd-202ENSMUST00000087225 2859 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Trav4d-2-201ENSMUST00000120914 335 ntBASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Gm40466-201ENSMUST00000212174 422 ntBASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Gm10371-202ENSMUST00000228010 1081 ntBASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Gm10268-201ENSMUST00000085340 555 ntBASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Gm44942-201ENSMUST00000096093 2072 ntBASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Ddx28Q9CWT6 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC11.4□□□□□ -0.59
Ddx28Q9CWT6 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Ddx28Q9CWT6 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Ddx28Q9CWT6 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Ddx28Q9CWT6 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Ddx28Q9CWT6 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Ddx28Q9CWT6 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Ddx28Q9CWT6 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
Ddx28Q9CWT6 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Ddx28Q9CWT6 Myo15-203ENSMUST00000094135 11715 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Ddx28Q9CWT6 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Ddx28Q9CWT6 BC043934-202ENSMUST00000185694 2356 ntBASIC11.39□□□□□ -0.59
Ddx28Q9CWT6 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC11.39□□□□□ -0.59
Ddx28Q9CWT6 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 65.6 ms