Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 CU062626.3-201ENSMUST00000225522 1411 ntBASIC11.72□□□□□ -0.53
Msx1P13297 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC11.72□□□□□ -0.53
Msx1P13297 Gm23200-201ENSMUST00000104379 132 ntBASIC11.72□□□□□ -0.53
Msx1P13297 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC11.72□□□□□ -0.53
Msx1P13297 Gm13492-201ENSMUST00000119772 665 ntBASIC11.72□□□□□ -0.53
Msx1P13297 Gm13875-201ENSMUST00000120162 282 ntBASIC11.72□□□□□ -0.53
Msx1P13297 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC11.72□□□□□ -0.53
Msx1P13297 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 D6Ertd474e-203ENSMUST00000160188 683 ntTSL 3 BASIC11.72□□□□□ -0.53
Msx1P13297 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 Gm8856-201ENSMUST00000185254 1144 ntBASIC11.72□□□□□ -0.53
Msx1P13297 9530003J23Rik-201ENSMUST00000020392 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 AC141438.2-201ENSMUST00000215068 271 ntBASIC11.72□□□□□ -0.53
Msx1P13297 Gm7441-201ENSMUST00000220697 1074 ntBASIC11.72□□□□□ -0.53
Msx1P13297 AC135114.1-201ENSMUST00000228682 270 ntBASIC11.72□□□□□ -0.53
Msx1P13297 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC11.72□□□□□ -0.53
Msx1P13297 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Msx1P13297 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Msx1P13297 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Msx1P13297 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Msx1P13297 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Msx1P13297 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC11.71□□□□□ -0.53
Msx1P13297 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Msx1P13297 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Hmgn3-203ENSMUST00000185315 1391 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
Msx1P13297 Skint10-201ENSMUST00000060327 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Msx1P13297 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Msx1P13297 Gm14525-201ENSMUST00000119649 893 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC11.71□□□□□ -0.53
Msx1P13297 Gm13487-201ENSMUST00000122240 864 ntBASIC11.71□□□□□ -0.53
Msx1P13297 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC11.71□□□□□ -0.53
Msx1P13297 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Gm36966-201ENSMUST00000192217 413 ntBASIC11.71□□□□□ -0.53
Msx1P13297 Gm37835-201ENSMUST00000193305 361 ntBASIC11.71□□□□□ -0.53
Msx1P13297 5430434I15Rik-201ENSMUST00000197658 1257 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC11.71□□□□□ -0.53
Msx1P13297 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Gm42732-201ENSMUST00000202887 1197 ntBASIC11.71□□□□□ -0.53
Msx1P13297 Olfr163-ps1-201ENSMUST00000205891 940 ntBASIC11.71□□□□□ -0.53
Msx1P13297 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC11.71□□□□□ -0.53
Msx1P13297 Gm44777-203ENSMUST00000206930 571 ntTSL 3 BASIC11.71□□□□□ -0.53
Msx1P13297 4921513I08Rik-201ENSMUST00000206993 866 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Gm45118-201ENSMUST00000208928 825 ntBASIC11.71□□□□□ -0.53
Msx1P13297 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC11.71□□□□□ -0.53
Msx1P13297 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC11.71□□□□□ -0.53
Msx1P13297 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC11.71□□□□□ -0.53
Msx1P13297 9430031K09Rik-201ENSMUST00000222913 925 ntBASIC11.71□□□□□ -0.53
Msx1P13297 AC168059.2-201ENSMUST00000224473 333 ntBASIC11.71□□□□□ -0.53
Msx1P13297 CT025694.1-201ENSMUST00000226188 934 ntBASIC11.71□□□□□ -0.53
Msx1P13297 Gm10371-202ENSMUST00000228010 1081 ntBASIC11.71□□□□□ -0.53
Msx1P13297 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Msx1P13297 Olfr955-201ENSMUST00000073946 945 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Msx1P13297 Gm26035-201ENSMUST00000083065 308 ntBASIC11.71□□□□□ -0.53
Msx1P13297 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Msx1P13297 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Msx1P13297 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC11.71□□□□□ -0.54
Msx1P13297 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Msx1P13297 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.54
Msx1P13297 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Msx1P13297 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Msx1P13297 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Msx1P13297 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Msx1P13297 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC11.71□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 71.5 ms