Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Gm17376-201ENSMUST00000166016 84 ntBASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Gm3096-201ENSMUST00000185770 364 ntBASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Gm38319-201ENSMUST00000194537 1266 ntBASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Gm6082-201ENSMUST00000215204 454 ntBASIC13.22□□□□□ -0.29
Chmp6P0C0A3 AC169036.1-201ENSMUST00000227994 296 ntBASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Gm43365-201ENSMUST00000196522 2106 ntBASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Gm4735-201ENSMUST00000138679 1302 ntBASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Gm5855-201ENSMUST00000200240 1305 ntBASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Gm42937-201ENSMUST00000197360 752 ntBASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Gm8712-201ENSMUST00000221090 701 ntBASIC13.21□□□□□ -0.29
Chmp6P0C0A3 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Gm18615-201ENSMUST00000222919 1031 ntBASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Gm10312-201ENSMUST00000078515 489 ntBASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Chmp6P0C0A3 Gm5884-201ENSMUST00000036712 1479 ntBASIC13.21□□□□□ -0.3
Chmp6P0C0A3 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Chmp6P0C0A3 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Chmp6P0C0A3 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Chmp6P0C0A3 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Chmp6P0C0A3 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Chmp6P0C0A3 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Gm2606-201ENSMUST00000100754 1002 ntBASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Gm12286-201ENSMUST00000119246 1002 ntBASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Gm14832-201ENSMUST00000121289 322 ntBASIC13.2□□□□□ -0.3
Chmp6P0C0A3 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Gm24845-201ENSMUST00000158034 109 ntBASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Gm37259-201ENSMUST00000193903 849 ntBASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Gm44958-201ENSMUST00000203734 736 ntBASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 AC154222.2-201ENSMUST00000225848 607 ntBASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Chmp6P0C0A3 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms