Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC10.02□□□□□ -0.81
Hmgb3O54879 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Gm14704-201ENSMUST00000120300 874 ntBASIC10.02□□□□□ -0.81
Hmgb3O54879 Gm13616-201ENSMUST00000120600 222 ntBASIC10.02□□□□□ -0.81
Hmgb3O54879 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC10.02□□□□□ -0.81
Hmgb3O54879 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Gm31326-201ENSMUST00000191856 1048 ntBASIC10.02□□□□□ -0.81
Hmgb3O54879 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC10.02□□□□□ -0.81
Hmgb3O54879 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC10.02□□□□□ -0.81
Hmgb3O54879 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC10.02□□□□□ -0.81
Hmgb3O54879 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC10.02□□□□□ -0.81
Hmgb3O54879 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC10.02□□□□□ -0.81
Hmgb3O54879 AC130671.2-201ENSMUST00000227224 1621 ntBASIC10.02□□□□□ -0.81
Hmgb3O54879 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC10.02□□□□□ -0.81
Hmgb3O54879 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC10.02□□□□□ -0.81
Hmgb3O54879 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 AC154527.2-201ENSMUST00000225256 1466 ntBASIC10.02□□□□□ -0.81
Hmgb3O54879 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC10.02□□□□□ -0.81
Hmgb3O54879 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.81
Hmgb3O54879 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC10.02□□□□□ -0.81
Hmgb3O54879 Adgrl3-204ENSMUST00000117407 5705 ntTSL 5 BASIC10.02□□□□□ -0.81
Hmgb3O54879 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
Hmgb3O54879 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC10.02□□□□□ -0.81
Hmgb3O54879 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC10.02□□□□□ -0.81
Hmgb3O54879 Gm19692-201ENSMUST00000203856 2084 ntBASIC10.02□□□□□ -0.81
Hmgb3O54879 Cers4-201ENSMUST00000008350 9475 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Dido1-204ENSMUST00000103055 4613 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Rasgrp4-201ENSMUST00000032811 4621 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC10.01□□□□□ -0.81
Hmgb3O54879 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Arpp21-223ENSMUST00000162097 3952 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
Hmgb3O54879 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Ncoa1-209ENSMUST00000220434 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Serpinc1-201ENSMUST00000064725 4970 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC10.01□□□□□ -0.81
Hmgb3O54879 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Pakap-203ENSMUST00000150412 5163 ntAPPRIS P5 TSL 5 BASIC10.01□□□□□ -0.81
Hmgb3O54879 Htr5a-201ENSMUST00000036227 5376 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC10.01□□□□□ -0.81
Hmgb3O54879 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC10.01□□□□□ -0.81
Hmgb3O54879 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC10.01□□□□□ -0.81
Hmgb3O54879 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC10.01□□□□□ -0.81
Hmgb3O54879 Gm42929-201ENSMUST00000198374 1286 ntBASIC10.01□□□□□ -0.81
Hmgb3O54879 Gm43514-201ENSMUST00000198852 424 ntBASIC10.01□□□□□ -0.81
Hmgb3O54879 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Gm16372-201ENSMUST00000073088 450 ntBASIC10.01□□□□□ -0.81
Hmgb3O54879 Erbb3-201ENSMUST00000082059 6016 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Zfhx3-201ENSMUST00000043896 16433 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Gm43172-201ENSMUST00000202139 2137 ntBASIC10.01□□□□□ -0.81
Hmgb3O54879 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Ccdc47-201ENSMUST00000002043 5193 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
Hmgb3O54879 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC10.01□□□□□ -0.81
Hmgb3O54879 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
Hmgb3O54879 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Ly75-201ENSMUST00000028362 5172 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Plec-221ENSMUST00000171562 14944 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Plec-204ENSMUST00000072692 14944 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Hmgb3O54879 AC122840.1-201ENSMUST00000220915 3334 ntBASIC10□□□□□ -0.81
Hmgb3O54879 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC10□□□□□ -0.81
Hmgb3O54879 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Heatr5b-201ENSMUST00000097281 6437 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
Hmgb3O54879 Thsd7b-202ENSMUST00000073527 6213 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Hmgb3O54879 Ttc28-206ENSMUST00000156290 10688 ntAPPRIS P2 TSL 5 BASIC10□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 298.3 ms