Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Gm12943-201ENSMUST00000119616 210 ntBASIC14.17□□□□□ -0.14
Scn11aQ9R053 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 AC034099.1-202ENSMUST00000133843 833 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Gm44421-201ENSMUST00000205064 1221 ntBASIC14.17□□□□□ -0.14
Scn11aQ9R053 AC153929.1-201ENSMUST00000219009 303 ntBASIC14.17□□□□□ -0.14
Scn11aQ9R053 Gm14005-208ENSMUST00000223654 681 ntBASIC14.17□□□□□ -0.14
Scn11aQ9R053 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Gm19692-201ENSMUST00000203856 2084 ntBASIC14.17□□□□□ -0.14
Scn11aQ9R053 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Gm21778-201ENSMUST00000178779 471 ntBASIC14.17□□□□□ -0.14
Scn11aQ9R053 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Gm19009-201ENSMUST00000223072 823 ntBASIC14.17□□□□□ -0.14
Scn11aQ9R053 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Gm8522-201ENSMUST00000118416 1929 ntBASIC14.16□□□□□ -0.14
Scn11aQ9R053 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Gm12990-201ENSMUST00000120372 468 ntBASIC14.16□□□□□ -0.14
Scn11aQ9R053 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Gm37299-201ENSMUST00000193951 826 ntBASIC14.16□□□□□ -0.14
Scn11aQ9R053 Gm44315-201ENSMUST00000203041 219 ntBASIC14.16□□□□□ -0.14
Scn11aQ9R053 Gm44953-201ENSMUST00000208745 1286 ntBASIC14.16□□□□□ -0.14
Scn11aQ9R053 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Lgi3-203ENSMUST00000226548 1001 ntBASIC14.16□□□□□ -0.14
Scn11aQ9R053 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Olfr584-201ENSMUST00000098210 964 ntBASIC14.16□□□□□ -0.14
Scn11aQ9R053 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Gm43760-201ENSMUST00000202120 3015 ntBASIC14.16□□□□□ -0.14
Scn11aQ9R053 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn11aQ9R053 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Gm43364-201ENSMUST00000196046 3274 ntBASIC14.15□□□□□ -0.14
Scn11aQ9R053 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Gm11949-201ENSMUST00000117640 372 ntBASIC14.15□□□□□ -0.14
Scn11aQ9R053 Gm1848-201ENSMUST00000120711 789 ntBASIC14.15□□□□□ -0.14
Scn11aQ9R053 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn11aQ9R053 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms