Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Gm11964-201ENSMUST00000120982 444 ntBASIC12.82□□□□□ -0.36
Usp11Q99K46 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
Usp11Q99K46 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC12.82□□□□□ -0.36
Usp11Q99K46 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC12.82□□□□□ -0.36
Usp11Q99K46 Gm45331-201ENSMUST00000209868 554 ntBASIC12.82□□□□□ -0.36
Usp11Q99K46 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC12.82□□□□□ -0.36
Usp11Q99K46 Gm10608-202ENSMUST00000213924 676 ntBASIC12.82□□□□□ -0.36
Usp11Q99K46 Gm45930-201ENSMUST00000221330 292 ntBASIC12.82□□□□□ -0.36
Usp11Q99K46 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Usp11Q99K46 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC12.82□□□□□ -0.36
Usp11Q99K46 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Usp11Q99K46 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC12.82□□□□□ -0.36
Usp11Q99K46 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Usp11Q99K46 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Usp11Q99K46 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp11Q99K46 Gm37437-201ENSMUST00000194451 1937 ntBASIC12.82□□□□□ -0.36
Usp11Q99K46 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC12.82□□□□□ -0.36
Usp11Q99K46 Gm18222-201ENSMUST00000202416 1387 ntBASIC12.81□□□□□ -0.36
Usp11Q99K46 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 AC122860.2-201ENSMUST00000217967 2671 ntBASIC12.81□□□□□ -0.36
Usp11Q99K46 Map1b-203ENSMUST00000223725 2669 ntBASIC12.81□□□□□ -0.36
Usp11Q99K46 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Gm13297-201ENSMUST00000120205 934 ntBASIC12.81□□□□□ -0.36
Usp11Q99K46 Gm15703-201ENSMUST00000120250 880 ntBASIC12.81□□□□□ -0.36
Usp11Q99K46 Gm5863-201ENSMUST00000121760 1008 ntBASIC12.81□□□□□ -0.36
Usp11Q99K46 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC12.81□□□□□ -0.36
Usp11Q99K46 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC12.81□□□□□ -0.36
Usp11Q99K46 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC12.81□□□□□ -0.36
Usp11Q99K46 Gm8227-201ENSMUST00000223306 571 ntBASIC12.81□□□□□ -0.36
Usp11Q99K46 AC108416.1-202ENSMUST00000228927 1201 ntBASIC12.81□□□□□ -0.36
Usp11Q99K46 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Usp11Q99K46 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Usp11Q99K46 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Gm11661-201ENSMUST00000121761 1327 ntBASIC12.81□□□□□ -0.36
Usp11Q99K46 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp11Q99K46 Gm18983-201ENSMUST00000222884 2729 ntBASIC12.81□□□□□ -0.36
Usp11Q99K46 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Usp11Q99K46 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC12.81□□□□□ -0.36
Usp11Q99K46 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Usp11Q99K46 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Usp11Q99K46 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Usp11Q99K46 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Usp11Q99K46 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Usp11Q99K46 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Usp11Q99K46 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC12.8□□□□□ -0.36
Usp11Q99K46 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Gm8018-201ENSMUST00000173536 789 ntBASIC12.8□□□□□ -0.36
Usp11Q99K46 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC12.8□□□□□ -0.36
Usp11Q99K46 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Gm37489-201ENSMUST00000191883 159 ntBASIC12.8□□□□□ -0.36
Usp11Q99K46 Gm44405-201ENSMUST00000198952 126 ntBASIC12.8□□□□□ -0.36
Usp11Q99K46 AC159896.2-201ENSMUST00000214753 269 ntBASIC12.8□□□□□ -0.36
Usp11Q99K46 AC154319.1-201ENSMUST00000216330 312 ntBASIC12.8□□□□□ -0.36
Usp11Q99K46 Gm45925-201ENSMUST00000218882 744 ntBASIC12.8□□□□□ -0.36
Usp11Q99K46 AL589735.1-201ENSMUST00000224353 270 ntBASIC12.8□□□□□ -0.36
Usp11Q99K46 AC169036.1-201ENSMUST00000227994 296 ntBASIC12.8□□□□□ -0.36
Usp11Q99K46 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Usp11Q99K46 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Gm43823-201ENSMUST00000197391 1808 ntBASIC12.8□□□□□ -0.36
Usp11Q99K46 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC12.8□□□□□ -0.36
Usp11Q99K46 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp11Q99K46 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms