Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 BC043934-202ENSMUST00000185694 2356 ntBASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Gm12201-201ENSMUST00000120657 1234 ntBASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Gm17208-201ENSMUST00000168388 535 ntBASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Gm5866-201ENSMUST00000177881 973 ntBASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Gm27701-201ENSMUST00000184498 110 ntBASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Gm6157-201ENSMUST00000199935 1897 ntBASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC11.37□□□□□ -0.59
Trim40Q3UWA4 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 AC093022.4-203ENSMUST00000228523 2657 ntBASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Mir692-1-201ENSMUST00000102263 109 ntBASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm13612-201ENSMUST00000119276 390 ntBASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm28911-201ENSMUST00000188837 117 ntBASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm18018-201ENSMUST00000198273 408 ntBASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 AC138329.2-201ENSMUST00000225579 1842 ntBASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm5884-201ENSMUST00000036712 1479 ntBASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Gm14608-201ENSMUST00000120030 1553 ntBASIC11.36□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms