Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Gm44967-201ENSMUST00000207047 631 ntBASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Gm44651-201ENSMUST00000207343 372 ntBASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Upf3bQ3ULL6 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Upf3bQ3ULL6 AC154671.1-201ENSMUST00000228617 1578 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC13□□□□□ -0.33
Upf3bQ3ULL6 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Gm11989-201ENSMUST00000117240 672 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Gm11362-201ENSMUST00000118838 850 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Gm25890-201ENSMUST00000177643 165 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Rnu1b2-201ENSMUST00000178073 165 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Rnu1b1-201ENSMUST00000178250 165 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Gm22614-201ENSMUST00000178300 165 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Rprl1-202ENSMUST00000198476 238 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Gm19187-201ENSMUST00000206781 892 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC13□□□□□ -0.33
Upf3bQ3ULL6 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Gm22042-201ENSMUST00000082989 165 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Gm26110-201ENSMUST00000083971 165 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3bQ3ULL6 Gm19817-201ENSMUST00000199764 2132 ntBASIC13□□□□□ -0.33
Upf3bQ3ULL6 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Gm12715-201ENSMUST00000121430 1128 ntBASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Gm38000-201ENSMUST00000192390 1215 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms