Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm11451-201ENSMUST00000118946 630 ntBASIC13.45□□□□□ -0.26
Col6a1Q04857 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC13.45□□□□□ -0.26
Col6a1Q04857 Gm5863-201ENSMUST00000121760 1008 ntBASIC13.45□□□□□ -0.26
Col6a1Q04857 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
Col6a1Q04857 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Gm3332-201ENSMUST00000189337 928 ntBASIC13.45□□□□□ -0.26
Col6a1Q04857 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Gm2517-201ENSMUST00000215651 348 ntBASIC13.45□□□□□ -0.26
Col6a1Q04857 AC122408.1-201ENSMUST00000218949 218 ntBASIC13.45□□□□□ -0.26
Col6a1Q04857 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC13.45□□□□□ -0.26
Col6a1Q04857 AC130671.2-201ENSMUST00000227224 1621 ntBASIC13.45□□□□□ -0.26
Col6a1Q04857 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC13.44□□□□□ -0.26
Col6a1Q04857 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC13.44□□□□□ -0.26
Col6a1Q04857 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC13.44□□□□□ -0.26
Col6a1Q04857 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC13.44□□□□□ -0.26
Col6a1Q04857 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Gm8100-201ENSMUST00000182906 988 ntBASIC13.44□□□□□ -0.26
Col6a1Q04857 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Ighv4-2-201ENSMUST00000192975 362 ntBASIC13.44□□□□□ -0.26
Col6a1Q04857 Gm42518-201ENSMUST00000196277 938 ntBASIC13.44□□□□□ -0.26
Col6a1Q04857 Olfr1347-205ENSMUST00000220413 964 ntBASIC13.44□□□□□ -0.26
Col6a1Q04857 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC13.44□□□□□ -0.26
Col6a1Q04857 AC129219.2-201ENSMUST00000224324 701 ntBASIC13.44□□□□□ -0.26
Col6a1Q04857 Gm807-202ENSMUST00000224929 408 ntBASIC13.44□□□□□ -0.26
Col6a1Q04857 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Col6a1Q04857 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Gm26448-201ENSMUST00000082446 203 ntBASIC13.44□□□□□ -0.26
Col6a1Q04857 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Col6a1Q04857 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC13.44□□□□□ -0.26
Col6a1Q04857 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC13.44□□□□□ -0.26
Col6a1Q04857 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC13.44□□□□□ -0.26
Col6a1Q04857 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
Col6a1Q04857 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Col6a1Q04857 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Col6a1Q04857 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC13.44□□□□□ -0.26
Col6a1Q04857 Gm42748-201ENSMUST00000199354 2341 ntBASIC13.44□□□□□ -0.26
Col6a1Q04857 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col6a1Q04857 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Col6a1Q04857 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Gm13809-201ENSMUST00000117921 597 ntBASIC13.43□□□□□ -0.26
Col6a1Q04857 Gm14724-201ENSMUST00000118400 537 ntBASIC13.43□□□□□ -0.26
Col6a1Q04857 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC13.43□□□□□ -0.26
Col6a1Q04857 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC13.43□□□□□ -0.26
Col6a1Q04857 Gm19091-201ENSMUST00000208120 978 ntBASIC13.43□□□□□ -0.26
Col6a1Q04857 Gm45743-201ENSMUST00000212701 2795 ntBASIC13.43□□□□□ -0.26
Col6a1Q04857 Gm7395-201ENSMUST00000216059 1045 ntBASIC13.43□□□□□ -0.26
Col6a1Q04857 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC13.43□□□□□ -0.26
Col6a1Q04857 AC154184.3-201ENSMUST00000225620 1090 ntBASIC13.43□□□□□ -0.26
Col6a1Q04857 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC13.43□□□□□ -0.26
Col6a1Q04857 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
Col6a1Q04857 Gm8798-201ENSMUST00000211877 1661 ntBASIC13.43□□□□□ -0.26
Col6a1Q04857 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC13.43□□□□□ -0.26
Col6a1Q04857 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC13.43□□□□□ -0.26
Col6a1Q04857 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC13.43□□□□□ -0.26
Col6a1Q04857 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col6a1Q04857 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms